R/barplot2.R

Defines functions barplot2

Documented in barplot2

barplot2 <- function(height, width = 1, space = NULL, names.arg = NULL,
                     legend.text = NULL, beside = FALSE, horiz = FALSE,
                     density = NULL, angle = 45,
                     col = NULL, border = par("fg"),
                     main = NULL, sub = NULL, xlab = NULL, ylab = NULL,
                     xlim = NULL, ylim = NULL, xpd = TRUE, log = "",
                     axes = TRUE, axisnames = TRUE,
                     cex.axis = par("cex.axis"), cex.names = par("cex.axis"),
                     inside = TRUE, plot = TRUE, axis.lty = 0, offset = 0, add = FALSE,
                     args.legend = NULL, x.offset = 0, ...){
  if (!missing(inside)) .NotYetUsed("inside", error = FALSE)
  
  if (is.null(space))
	space <- if (is.matrix(height) && beside) c(0, 1) else 0.2
  space <- space * mean(width)
  
  if (plot && axisnames && is.null(names.arg))
	names.arg <-
      if(is.matrix(height)) colnames(height) else names(height)
  
  if (is.vector(height)
      || (is.array(height) && (length(dim(height)) == 1))) {
	## Treat vectors and 1-d arrays the same.
	height <- cbind(height)
	beside <- TRUE
	## The above may look strange, but in particular makes color
	## specs work as most likely expected by the users.
	if(is.null(col)) col <- "grey"
  } else if (is.matrix(height)) {
	## In the matrix case, we use "colors" by default.
	if(is.null(col))
      col <- grey.colors(nrow(height))
  }
  else
	stop("'height' must be a vector or a matrix")
  
  if(is.logical(legend.text))
    legend.text <-
      if(legend.text && is.matrix(height)) rownames(height)
  
  stopifnot(is.character(log))
  logx <- logy <- FALSE
  if (log != "") {
	logx <- length(grep("x", log)) > 0L
	logy <- length(grep("y", log)) > 0L
  }
  ## Cannot use rect(*, density=.) when log scales used
  if ((logx || logy) && !is.null(density))
    stop("Cannot use shading lines in bars when log scale is used")
  
  NR <- nrow(height)
  NC <- ncol(height)
  
  if (beside) {
	if (length(space) == 2)
      space <- rep.int(c(space[2L], rep.int(space[1L], NR - 1)), NC)
	width <- rep(width, length.out = NR)
  } else {
	width <- rep(width, length.out = NC)
  }
  
  offset <- rep(as.vector(offset), length.out = length(width))
  
  delta <- width / 2
  w.r <- cumsum(space + width) + x.offset
  w.m <- w.r - delta
  w.l <- w.m - delta
  
  log.dat <- (logx && horiz) || (logy && !horiz)# log scale in data direction
  ## check height + offset if using log scale to prevent log(<=0) error
  if (log.dat) {
	if (min(height + offset, na.rm = TRUE) <= 0)
      stop("log scale error: at least one 'height + offset' value <= 0")
	if (logx && !is.null(xlim) && min(xlim) <= 0)
      stop("log scale error: 'xlim' <= 0")
	if (logy && !is.null(ylim) && min(ylim) <= 0)
      stop("log scale error: 'ylim' <= 0")
    
	## if axis limit is set to < above, adjust bar base value
	## to draw a full bar
	rectbase <-
      if	    (logy && !horiz && !is.null(ylim))	ylim[1L]
      else if (logx && horiz  && !is.null(xlim))	xlim[1L]
      else 0.9 * min(height, na.rm = TRUE)
  } else rectbase <- 0
  
  ## if stacked bar, set up base/cumsum levels, adjusting for log scale
  if (!beside)
	height <- rbind(rectbase, apply(height, 2L, cumsum))
  
  rAdj <- offset + (if (log.dat) 0.9 * height else -0.01 * height)
  
  if (horiz) {
	if (is.null(xlim)) xlim <- range(rAdj, height + offset, na.rm = TRUE)
	if (is.null(ylim)) ylim <- c(min(w.l), max(w.r))
  } else {
	if (is.null(xlim)) xlim <- c(min(w.l), max(w.r))
	if (is.null(ylim)) ylim <- range(rAdj, height + offset, na.rm = TRUE)
  }
  if (beside)
	w.m <- matrix(w.m, ncol = NC)
  if(plot){ ##-------- Plotting :
    if(exists("dev.hold")) dev.hold()
    opar <-
      if (horiz)	par(xaxs = "i", xpd = xpd)
      else	par(yaxs = "i", xpd = xpd)
    if(exists("dev.hold")) on.exit({dev.flush();par(opar)})
    else                   on.exit(par(opar))
    
	if (!add) {
      plot.new()
      plot.window(xlim, ylim, log = log, ...)
	}
    
	xyrect <- function(x1,y1, x2,y2, horizontal = TRUE, ...) {
      if(horizontal)
		rect(x1,y1, x2,y2, ...)
      else
		rect(y1,x1, y2,x2, ...)
	}
	if (beside)
      xyrect(rectbase + offset, w.l, c(height) + offset, w.r,
             horizontal = horiz,
             angle = angle, density = density,
             col = col, border = border)
	else {
      ## noInside <- NC > 1 && !inside # outside border, but not inside
      ## bordr <- if(noInside) 0 else border
      for (i in 1L:NC) {
		xyrect(height[1L:NR, i] + offset[i], w.l[i],
		       height[ -1,  i] + offset[i], w.r[i],
		       horizontal = horiz, angle = angle, density = density,
		       col = col, border = border)# = bordr
		## if(noInside)
		##  xyrect(min(height[, i]), w.l[i], max(height[, i]), w.r[i],
		##	   horizontal = horiz, border= border)
      }
	}
	if (axisnames && !is.null(names.arg)) { # specified or from {col}names
      at.l <- if (length(names.arg) != length(w.m)) {
		if (length(names.arg) == NC) # i.e. beside (!)
          colMeans(w.m)
		else
          stop("incorrect number of names")
      } else w.m
      axis(if(horiz) 2 else 1, at = at.l, labels = names.arg,
           lty = axis.lty, cex.axis = cex.names, ...)
	}
	if(!is.null(legend.text)) {
      legend.col <- rep(col, length.out = length(legend.text))
      if((horiz & beside) || (!horiz & !beside)){
		legend.text <- rev(legend.text)
		legend.col <- rev(legend.col)
		density <- rev(density)
		angle <- rev(angle)
      }
      xy <- par("usr")
      if(is.null(args.legend)) {
        legend(xy[2L] - xinch(0.1), xy[4L] - yinch(0.1),
               legend = legend.text, angle = angle, density = density,
               fill = legend.col, xjust = 1, yjust = 1)
      } else {
        args.legend1 <- list(x = xy[2L] - xinch(0.1),
                             y = xy[4L] - yinch(0.1),
                             legend = legend.text,
                             angle = angle, density = density,
                             fill = legend.col, xjust = 1, yjust = 1)
        args.legend1[names(args.legend)] <- args.legend
        do.call("legend", args.legend1)
      }
	}
	title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...)
	if(axes) axis(if(horiz) 1 else 2, cex.axis = cex.axis, ...)
	invisible(w.m)
  } else w.m
}

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tis documentation built on May 29, 2017, 8:18 p.m.