process.total.coverage.statistics: Process total coverage statistics
In varitas: Variant Calling in Targeted Analysis Sequencing Data
Description
Usage
Arguments
Value
View source: R/process.total.coverage.statistics.R
Description
Process reports generated by flagstat.
Assumes reports for before and after off-target filtering have been written to the same file, with separating headers
Usage
1
process.total.coverage.statistics(project.directory)
Arguments
project.directory
Path to project directory. Each sample should have its own subdirectory
Value
data frame with extracted statistics
varitas documentation built on Nov. 14, 2020, 1:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/process.total.coverage.statistics.R
Description
Process reports generated by flagstat. Assumes reports for before and after off-target filtering have been written to the same file, with separating headers
Usage
1 | process.total.coverage.statistics(project.directory)
|
Arguments
project.directory |
Path to project directory. Each sample should have its own subdirectory |
Value
data frame with extracted statistics
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.