run.ides: Run iDES
In varitas: Variant Calling in Targeted Analysis Sequencing Data

Run iDES

1 2	run.ides(project.directory, sample.id.pattern = "._S\\d+$", sample.ids = NULL, job.dependencies = NULL)

`project.directory`	Directory containing files
`sample.id.pattern`	Regex pattern to match sample IDs
`sample.ids`	Vector of sample IDs
`job.dependencies`	Vector of job dependencies

Run iDES step 1on each sample, to tally up calls by strand. Files are output to a the sample subdirectory

None

Deprecated function for running iDES. Follows previous development package without specification data frames

varitas documentation built on Nov. 14, 2020, 1:07 a.m.

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