set.varitas.options: Set options for varitas pipeline.

In varitas: Variant Calling in Targeted Analysis Sequencing Data

Description

Set or overwrite options for the VariTAS pipeline. Nested options should be separated by a dot. For example, to update the reference genome for grch38, use reference_genome.grch38

Usage

set.varitas.options(...)

Arguments

...	options to set

Value

None

Examples

## Not run: 
set.varitas.options(reference_build = 'grch38'); 	
	set.varitas.options(
	filters.mutect.min_normal_depth = 10,
	filters.vardict.min_normal_depth = 10
	);

## End(Not run)

varitas documentation built on Nov. 14, 2020, 1:07 a.m.