associate_gene_chip: Associate genes to a GRanges object from ChIP-seq data.
In ArnaudDroitLab/ef.utils: Eric Utilities
Description
Usage
Arguments
Value
View source: R/AnnotationHelper.R
Description
Associate genes to a GRanges object from ChIP-seq data.
Usage
1
associate_gene_chip(regions, expression.data = NULL, biosample, genome.build)
Arguments
regions
A GRanges object to annotate.
expression.data
A data frame containing the levels of expression of genes, according to their EMSEMBL id.
biosample
The biosample identifier from ENCODE. Valid examples are
GM12878, K562 or MCF-7.
genome.build
Which genome assembly should the results come from?
Value
The GRanges object with associated genes.
ArnaudDroitLab/ef.utils documentation built on Aug. 13, 2019, 9:09 p.m.
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Description Usage Arguments Value
View source: R/AnnotationHelper.R
Description
Associate genes to a GRanges object from ChIP-seq data.
Usage
1 | associate_gene_chip(regions, expression.data = NULL, biosample, genome.build)
|
Arguments
regions |
A GRanges object to annotate. |
expression.data |
A data frame containing the levels of expression of genes, according to their EMSEMBL id. |
biosample |
The biosample identifier from ENCODE. Valid examples are GM12878, K562 or MCF-7. |
genome.build |
Which genome assembly should the results come from? |
Value
The GRanges object with associated genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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