get_promoters: Given a set of Entrez IDS, retrieve the coordinates of those...

Description Usage Arguments Value

View source: R/AnnotationHelper.R

Description

Given a set of Entrez IDS, retrieve the coordinates of those genes' promoters.

Usage

1
get_promoters(selected.genes, annotations.list, flank.size = 1000)

Arguments

selected.genes

A vector of ENTREZ gene ids whose promoters should be retrieved.

annotations.list

A list of annotation databases returned by select_annotations.

flank.size

How many base pairs upstream of the TSS should we retrieve?

Value

A GRanges objects representing the promoters of the given genes.


ArnaudDroitLab/ef.utils documentation built on Nov. 24, 2018, 5:11 p.m.