get_promoters: Given a set of Entrez IDS, retrieve the coordinates of those...
In ArnaudDroitLab/ef.utils: Eric Utilities
Description
Usage
Arguments
Value
View source: R/AnnotationHelper.R
Description
Given a set of Entrez IDS, retrieve the coordinates of those genes' promoters.
Usage
1
get_promoters(selected.genes, annotations.list, flank.size = 1000)
Arguments
selected.genes
A vector of ENTREZ gene ids whose promoters should be
retrieved.
annotations.list
A list of annotation databases returned by
select_annotations.
flank.size
How many base pairs upstream of the TSS should we retrieve?
Value
A GRanges objects representing the promoters of the given genes.
ArnaudDroitLab/ef.utils documentation built on Aug. 13, 2019, 9:09 p.m.
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Description Usage Arguments Value
View source: R/AnnotationHelper.R
Description
Given a set of Entrez IDS, retrieve the coordinates of those genes' promoters.
Usage
1 | get_promoters(selected.genes, annotations.list, flank.size = 1000)
|
Arguments
selected.genes |
A vector of ENTREZ gene ids whose promoters should be retrieved. |
annotations.list |
A list of annotation databases returned by
|
flank.size |
How many base pairs upstream of the TSS should we retrieve? |
Value
A GRanges objects representing the promoters of the given genes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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