API for ArnaudDroitLab/ef.utils
Eric Utilities

Global functions
annotate_chip Man page Source code
annotate_region Man page Source code
annotate_venn_center Man page Source code
annotate_venn_exclusive Man page Source code
associate_chrom_state Man page Source code
associate_fitness_genes Man page Source code
associate_gene_chip Man page Source code
associate_genomic_region Man page Source code
associate_histone_marks Man page Source code
associate_is_gene_active Man page Source code
associate_tf Man page Source code
associate_tissue_specificity_human Man page Source code
build_intersect Man page Source code
build_intersect_all Man page Source code
characterize_gene_set Man page Source code
characterize_region Man page Source code
chrom_state_match Man page Source code
collapse_regions Man page Source code
consensus.and.signal.mean Source code
csaw.save.plots Man page Source code
csaw_analyze Man page Source code
default_download_filter_chip Man page Source code
default_download_filter_rna Man page Source code
download.chip.and.import Source code
download.one.chrom.state Man page Source code
download_chromatin_states Man page Source code
download_encode_chip Man page Source code
download_encode_histones Man page Source code
download_encode_polymerases Man page Source code
download_encode_rna Man page Source code
download_encode_tf Man page Source code
exclusive.overlap.internal Man page Source code
filter.reads.to.counts Man page Source code
gene_from_regions Man page Source code
gene_peaks_distances Man page Source code
get.chrom.state.url Man page Source code
get_encode_mnemonic Man page Source code
get_promoters Man page Source code
histone_download_filter_chip Man page Source code
import.and.discard.metadata Man page Source code
import.plus.consensus Source code
import_chrom_states Man page Source code
import_files_into_grl Man page Source code
import_into_grl Man page Source code
inclusive.overlap.internal Man page Source code
install_annotations Man page Source code
internal.download_chrom_states Source code
intersect_overlap Man page Source code
intersect_venn_plot Man page Source code
isoform_download_filter_rna Man page Source code
kegg_enrichment Man page Source code
kegg_enrichment_regions Man page Source code
load_chrom_state Man page Source code
motif_enrichment Man page Source code
motif_enrichment_genes Man page Source code
multiple.testing Man page Source code
multiple_keggs_plot Man page Source code
multiple_region_enrichment Man page Source code
normalization.factors Man page Source code
pairwise_overlap Man page Source code
partition_genomic_regions Man page Source code
pol2_download_filter_chip Man page Source code
post_processing Man page Source code
project_ranges Man page Source code
read_identical Man page Source code
reads.to.counts Man page Source code
region_consensus Man page Source code
region_enrichment Man page Source code
region_enrichment_summary Man page Source code
region_overlap Man page Source code
select_annotations Man page Source code
simple_chrom_state_map Man page Source code
simplify_chrom_state Man page Source code
test.diff.binding Man page Source code
ArnaudDroitLab/ef.utils documentation built on May 3, 2018, 11:23 p.m.