multiple_keggs_plot: Generates a plot representing significant kegg pathways from...

In ArnaudDroitLab/ef.utils: Eric Utilities

Description

Generates a plot representing significant kegg pathways from an enrichment result.

Usage

multiple_keggs_plot(kegg.results.list, filename, p.threshold = 0.05,
  n.threshold = 2)

Arguments

kegg.results.list	A list of enrichment results returned by kegg_enrichment.
filename	The name of the file where the plot should be saved.
p.threshold	Minimum p-value for a category to be plotted.
n.threshold	Minimum number times a pathway is reported for it to be plotted.

ArnaudDroitLab/ef.utils documentation built on Aug. 13, 2019, 9:09 p.m.