default_download_filter_rna: Default filtering function for 'download_encode_rna'.

Description Usage Arguments Value

View source: R/EncodeHelper.R

Description

The filtering function does three things:

  1. It removes all files which do not have the correct genome assembly.

  2. It only keeps files with counts for genes, not transcripts or isoforms.

  3. If removes any file where treatment is not NA.

Usage

1
default_download_filter_rna(query.results, genome.assembly)

Arguments

query.results

A partial data.frame obtained from the queryEncode function.The biosample identifier from ENCODE. Valid examples are GM12878, K562.

genome.assembly

Which genome assembly should the results come from?

Value

A filtered data frame.


ArnaudDroitLab/ef.utils documentation built on Nov. 24, 2018, 5:11 p.m.