filter.reads.to.counts: Filter out unintersing windows, by global enrichment method.

In ArnaudDroitLab/ef.utils: Eric Utilities

Description

Filter out unintersing windows, by global enrichment method.

Usage

filter.reads.to.counts(bam.files, param, counted.reads, threshold)

Arguments

bam.files	A vector with the path to bam files.
param	A vector with the list of parameters to give to the functions.
counted.reads	A RangedSummarizedExperiment object returned by WindowCounts.
threshold	A numeric, the threshold to consider in order to cut out windows.

Value

A list with the following elements:

[[1]]

A filtered RangedSummarizedExperiment object returned by WindowCounts.

[[2]]

filter.stat, list, statistics of windows aboundances and their filter

ArnaudDroitLab/ef.utils documentation built on Aug. 13, 2019, 9:09 p.m.