filter.reads.to.counts: Filter out unintersing windows, by global enrichment method.

Description Usage Arguments Value

View source: R/CsawAnalysis.R

Description

Filter out unintersing windows, by global enrichment method.

Usage

1
filter.reads.to.counts(bam.files, param, counted.reads, threshold)

Arguments

bam.files

A vector with the path to bam files.

param

A vector with the list of parameters to give to the functions.

counted.reads

A RangedSummarizedExperiment object returned by WindowCounts.

threshold

A numeric, the threshold to consider in order to cut out windows.

Value

A list with the following elements:

[[1]]

A filtered RangedSummarizedExperiment object returned by WindowCounts.

[[2]]

filter.stat, list, statistics of windows aboundances and their filter


ArnaudDroitLab/ef.utils documentation built on Nov. 24, 2018, 5:11 p.m.