Files in ArnaudDroitLab/ef.utils
Eric Utilities

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AnnotationHelper.R R/CsawAnalysis.R R/EncodeHelper.R R/ImportHelper.R R/IntersectionHelper.R
R/sysdata.rda
eric.utils.Rproj
inst/extdata/guillimin/peak_call/GM12878_CDK9_Rep1_2WCE_Narrow_Peaks/GM12878_CDK9_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/guillimin/peak_call/GM12878_CDK9_Rep2_2WCE_Narrow_Peaks/GM12878_CDK9_Rep2_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/guillimin/peak_call/GM12878_MED1_Rep1_2WCE_Narrow_Peaks/GM12878_MED1_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/bed/GM12878_CDK9_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/bed/GM12878_CDK9_Rep2_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/bed/GM12878_MED1_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/narrow/GM12878_CDK9_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/narrow/GM12878_CDK9_Rep2_2WCE_Narrow_Peaks_peaks.narrowPeak
inst/extdata/plain/narrow/GM12878_MED1_Rep1_2WCE_Narrow_Peaks_peaks.narrowPeak
man/annotate_chip.Rd man/annotate_region.Rd man/annotate_venn_center.Rd man/annotate_venn_exclusive.Rd man/associate_chrom_state.Rd man/associate_fitness_genes.Rd man/associate_gene_chip.Rd man/associate_genomic_region.Rd man/associate_histone_marks.Rd man/associate_is_gene_active.Rd man/associate_tf.Rd man/associate_tissue_specificity_human.Rd man/build_intersect.Rd man/build_intersect_all.Rd man/characterize_gene_set.Rd man/characterize_region.Rd man/chrom_state_match.Rd man/collapse_regions.Rd man/csaw.save.plots.Rd man/csaw_analyze.Rd man/default_download_filter_chip.Rd man/default_download_filter_rna.Rd man/download.one.chrom.state.Rd man/download_chromatin_states.Rd man/download_encode_chip.Rd man/download_encode_histones.Rd man/download_encode_polymerases.Rd man/download_encode_rna.Rd man/download_encode_tf.Rd man/exclusive.overlap.internal.Rd man/filter.reads.to.counts.Rd man/gene_from_regions.Rd man/gene_peaks_distances.Rd man/get.chrom.state.url.Rd man/get_encode_mnemonic.Rd man/get_promoters.Rd man/histone_download_filter_chip.Rd man/import.and.discard.metadata.Rd man/import_chrom_states.Rd man/import_files_into_grl.Rd man/import_into_grl.Rd man/inclusive.overlap.internal.Rd man/install_annotations.Rd man/intersect_overlap.Rd man/intersect_venn_plot.Rd man/isoform_download_filter_rna.Rd man/kegg_enrichment.Rd man/kegg_enrichment_regions.Rd man/load_chrom_state.Rd man/motif_enrichment.Rd man/motif_enrichment_genes.Rd man/multiple.testing.Rd man/multiple_keggs_plot.Rd man/multiple_region_enrichment.Rd man/normalization.factors.Rd man/pairwise_overlap.Rd man/partition_genomic_regions.Rd man/pol2_download_filter_chip.Rd man/post_processing.Rd man/project_ranges.Rd man/read_identical.Rd man/reads.to.counts.Rd man/region_consensus.Rd man/region_enrichment.Rd man/region_enrichment_summary.Rd man/region_overlap.Rd man/select_annotations.Rd man/simple_chrom_state_map.Rd man/simplify_chrom_state.Rd man/test.diff.binding.Rd tests/unit.tests.R
ArnaudDroitLab/ef.utils documentation built on June 19, 2018, 8:26 p.m.