multiple_region_enrichment: Performs region enrichment on a set of regions and returns...

Description Usage Arguments Value

View source: R/IntersectionHelper.R

Description

Performs region enrichment on a set of regions and returns summarized results.

Usage

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multiple_region_enrichment(queries.regions, genome.regions,
  query.order = NULL, genome.order = NULL, file.prefix = NULL,
  plot.width = 7, plot.height = 7, individual.plots = FALSE)

Arguments

queries.regions

A list of regions whose enrichment ratios must be calculated.

genome.regions

The genome partition indicating which part of the genome fall within which category. Each range should have a 'name' attribute

file.prefix

An optional file name prefix for tables and graphical representation.

plot.width

The width of any resulting summary plot.

plot.height

The height of any resulting summary plot.

individual.plots

If true, produce individual plots as well as combined plots.

factor.order

An optional ordering of the region types for the produced plot.

Value

A list of summarized enrichment metrics.


ArnaudDroitLab/ef.utils documentation built on Nov. 24, 2018, 5:11 p.m.