inclusive.overlap.internal: Internal inclusive overlap.

Description Usage Arguments Value

View source: R/IntersectionHelper.R

Description

Returns the set of regions within all.regions where all conditions/proteins at indices which.factors are present, regardless of whether or not other factors are. Presence/absence at a given locus is obtained from the overlap.matrix parameter.

Usage

1
inclusive.overlap.internal(all.regions, overlap.matrix, which.factors)

Arguments

all.regions

A GRanges object with the regions represented

overlap.matrix

A matrix, with rows corresponding to regions in all.rgions, and columns corresponding to proteins/factors. A non-zero value in the matrix indicates the protein/factor of interest is present at this region.

which.factors

Indices of columns where the factor should be present.

Value

A GRanges object with the regions matching the given criteria.


ArnaudDroitLab/ef.utils documentation built on June 19, 2018, 8:26 p.m.