kegg_enrichment_regions: Perform KEGG enrichment on a set of regions.

Description Usage Arguments Value

View source: R/AnnotationHelper.R

Description

Conveniance function. Regions are converted to genes with gene_from_regions using default parameters.

Usage

1
kegg_enrichment_regions(regions, annotations.list, ...)

Arguments

regions

A GRanges object with regions to enriched for KEGG pathways.

annotations.list

A list of annotation databases returned by select_annotations.

...

Parameters to be passed to kegg_enrichment.

Value

A vector of Entrez gene ids containing a non-redundant list of the genes represented by the given regions.


ArnaudDroitLab/ef.utils documentation built on Nov. 24, 2018, 5:11 p.m.