download_chromatin_states: Helper function for obtaining chromatin states through...

In ArnaudDroitLab/ef.utils: Eric Utilities

Description

Helper function for obtaining chromatin states through import_chrom_states.

Usage

download_chromatin_states(biosample, assembly,
  download.dir = file.path("input/ENCODE", biosample, assembly))

Arguments

biosample	The biosample identifier from ENCODE. Valid examples are GM12878, K562 or MCF-7.
download.dir	The folder where the downloaded files should be stored. defaults to file.path("input/ENCODE", biosample, assembly, "chip-seq", "tf").
genome.assembly	Which genome assembly should the results come from?

Value

A GRanges object with the loaded chromatin states, or NULL if the do not exist.

ArnaudDroitLab/ef.utils documentation built on Aug. 13, 2019, 9:09 p.m.