import_into_grl: Import a set of bed files in a directory into a GRangesList.

In ArnaudDroitLab/ef.utils: Eric Utilities

Description

Import a set of bed files in a directory into a GRangesList.

Usage

import_into_grl(input.dir = ".", file.format = "bed", file.ext = NULL,
  discard.metadata = FALSE, dir.type = "plain")

Arguments

input.dir	The name of the directory from which BED files must be imported.
file.format	The format of the files to be imported. Can be "bed", "broad" or "narrow".
file.ext	The extension of the files to be imported.
discard.metadata	If TRUE, metadata will be discarded after importing.
dir.type	The architecture of the directory from which the files are to be imported. If "plain", files are sought directly within the directory. If "mugqic", the output structure of the MUGQIC pipeline is searched for.

Value

A GRanges object representing the regions of the files in input.dir.

ArnaudDroitLab/ef.utils documentation built on Aug. 13, 2019, 9:09 p.m.