characterize_region: Given a set of regions, perform annotation, motif enrichment...

Description Usage Arguments Value

View source: R/AnnotationHelper.R

Description

Given a set of regions, perform annotation, motif enrichment and KEGG enrichment.

Usage

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characterize_region(region, annotations.list, skip.motif = FALSE,
  skip.kegg = FALSE, output.dir = "output/")

Arguments

region

A GRanges object with regions to be characterized.

annotations.list

A list of annotation databases returned by select_annotations.

skip.motif

If TRUE, motif enrichment is skipped.

skip.kegg

If TRUE, KEGG pathway enrichment is skipped.

output.dir

The directory where output should be stored.A directory for storing output.

file.label

A label for generating file names to save the results. If NULL, results are not saved to disk.

Value

A list containing the characterization results.


ArnaudDroitLab/ef.utils documentation built on June 19, 2018, 8:26 p.m.