pol2_download_filter_chip: Alternative filtering function for 'download_encode_chip'.

Description Usage Arguments Value

View source: R/EncodeHelper.R

Description

The filtering function does three things:

  1. It removes all files which do not have the correct genome assembly.

  2. It removes all marks chips, except Pol II marks chips.

  3. If the provided results have been re-analyzed by the ENCODE Consortium, the ENCODE results are kept and the original ones discarded.

Usage

1
pol2_download_filter_chip(query.results, genome.assembly)

Arguments

query.results

A partial data.frame obtained from the queryEncode function.The biosample identifier from ENCODE. Valid examples are GM12878, K562.

genome.assembly

Which genome assembly should the results come from?

Value

A filtered data frame.


ArnaudDroitLab/ef.utils documentation built on Nov. 24, 2018, 5:11 p.m.