partition_genomic_regions: Generate a GRanges object partitioning the genome into...

In ArnaudDroitLab/ef.utils: Eric Utilities

Description

Generate a GRanges object partitioning the genome into Promoter, Exon, introns, downstream and distal intergenic regions.

Usage

partition_genomic_regions(TxDb, available.genome = NULL, BSgenome = NULL,
  flank.width = 1000)

Arguments

TxDb	A TxDb object giving the locations of all genes for the given genome.
available.genome	A Granges object to be used as a background of all the available genome.
BSgenome	A BSgenome object to be used for generating an available genome background. Ignored if available.genome is provided.
flank.width	The distance from the TSS/TES which are considered Promoters/Downstream.

Value

A GRanges object partitioning the genome into functional genomic regions.

ArnaudDroitLab/ef.utils documentation built on Aug. 13, 2019, 9:09 p.m.