BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing

An interactive R Shiny tool for visualizing single-cell RNAseq clustering results from common analysis pipelines. Its main goal is two-fold: A: to help select a biologically appropriate resolution or K from clustering results by assessing differential expression between the resulting clusters; and B: help annotate cell types and identify marker genes.

Getting started

Package details

Maintainer
LicenseMIT + file LICENSE
Version1.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("BaderLab/scClustViz")
BaderLab/scClustViz documentation built on March 16, 2019, 5:17 p.m.