fx_calcDist_numDE: Internal function for distance between clusters by number of...
In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing
fx_calcDist_numDE R Documentation
Internal function for distance between clusters by number of DE genes.
Description
Internal function. See DEdist.
Usage
fx_calcDist_numDE(deVS, FDRthresh)
Arguments
deVS
List of pairwise DE results from CalcDEcombn
FDRthresh
False discovery rate for counting significance.
Details
Counts number of DE genes between each pair of clusters from
CalcDEcombn output.
Value
A matrix of distances between clusters for each cluster resolution.
Interpretable by as.dist to generate a dist
object.
BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.
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| fx_calcDist_numDE | R Documentation |
Internal function for distance between clusters by number of DE genes.
Description
Internal function. See DEdist.
Usage
fx_calcDist_numDE(deVS, FDRthresh)
Arguments
deVS |
List of pairwise DE results from |
FDRthresh |
False discovery rate for counting significance. |
Details
Counts number of DE genes between each pair of clusters from
CalcDEcombn output.
Value
A matrix of distances between clusters for each cluster resolution.
Interpretable by as.dist to generate a dist
object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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