API for BaderLab/scClustViz
Differential Expression-based scRNAseq Cluster Assessment and Viewing

Global functions
CalcAllSCV Man page Source code
CalcCGS Man page
CalcCGS,sCVdata-method Man page
CalcDEcombn Man page
CalcDEcombn,sCVdata-method Man page
CalcDEvsRest Man page
CalcDEvsRest,sCVdata-method Man page
CalcSCV Man page Source code
CalcSilhouette Man page
CalcSilhouette,sCVdata-method Man page
ClustGeneStats Man page
ClustGeneStats,sCVdata-method Man page
ClustGeneStats<-,sCVdata-method Man page
Clusters Man page
Clusters,sCVdata-method Man page
Clusters<-,sCVdata-method Man page
DEcombn Man page
DEcombn,sCVdata-method Man page
DEcombn<-,sCVdata-method Man page
DEdist Man page
DEdist,sCVdata,character-method Man page
DEdist,sCVdata,matrix-method Man page
DEdist,sCVdata,missing-method Man page
DEdist,sCVdata,numeric-method Man page
DEdistNN Man page
DEdistNN,matrix-method Man page
DEdistNN,numeric-method Man page
DEmarker Man page
DEmarker,sCVdata-method Man page
DEneighb Man page
DEneighb,sCVdata-method Man page
DEvsRest Man page
DEvsRest,sCVdata-method Man page
DEvsRest<-,sCVdata-method Man page
Param Man page
Param,sCVdata-method Man page
Silhouette Man page
Silhouette,sCVdata-method Man page
Silhouette<-,sCVdata-method Man page
addCellMarkersToCGS Man page Source code
compareClusts_DF Source code
cosineSim Man page Source code
dotplotDEgenes Man page Source code
doubleDot Source code
findKeyType Man page Source code
fx_calcCGS Man page Source code
fx_calcCGS_BP Man page Source code
fx_calcDEcombn Man page Source code
fx_calcDEcombn_BP Man page Source code
fx_calcDEvsRest Man page Source code
fx_calcDEvsRest_BP Man page Source code
fx_calcDist_cellEmb Man page Source code
fx_calcDist_geneExpr Man page Source code
fx_calcDist_numDE Man page Source code
fx_calcDist_scoreDE Man page Source code
fx_calcEScombn Man page Source code
fx_calcESvsRest Man page Source code
fx_calcESvsRest_BP Man page Source code
fx_calcMarker Man page Source code
fx_calcNeighb Man page Source code
fx_calcSilhouette Man page Source code
geneSearch Source code
getEmb Man page
getExpr Man page
getMD Man page
hasEmb Man page
labelCellTypes Man page Source code
lower.half.circle Source code
map2symbol Man page Source code
meanLogX Man page Source code
origin.label.dist Man page Source code
overlap.edge Man page Source code
overlap.proportion.point Man page Source code
plot_GEboxplot Man page Source code
plot_clustSep Man page Source code
plot_clusterGenes_DEgenes Man page Source code
plot_clusterGenes_markers Man page Source code
plot_clusterGenes_search Man page Source code
plot_compareClusts Man page Source code
plot_compareClusts_DEscatter Source code
plot_compareClusts_MAplot Source code
plot_compareClusts_volcano Source code
plot_deDotplot Man page Source code
plot_mdBarplot Source code
plot_mdBoxplot Source code
plot_mdBoxplotX Source code
plot_mdBoxplotY Source code
plot_mdCompare Man page Source code
plot_mdPerClust Man page Source code
plot_mdScatter Source code
plot_sil Man page Source code
plot_tsne Man page Source code
runShiny Man page Source code
sCVdata Man page
sCVdata-class Man page
sCVparams Man page
sCVparams-class Man page
scClustViz Man page
scClustViz-package Man page
singleDot Source code
spreadLabels2 Man page Source code
tsne_labels Man page Source code
upper.half.circle Source code
BaderLab/scClustViz documentation built on July 15, 2019, 10:08 a.m.