tsne_labels: scClustViz plot element: Cluster names on cluster centroid.
In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing
tsne_labels R Documentation
scClustViz plot element: Cluster names on cluster centroid.
Description
See plot_tsne for application.
Usage
tsne_labels(sCVd, cell_coord, lab_type)
Arguments
sCVd
An sCVdata object.
cell_coord
A numeric matrix where named rows are cells, and two
columns are the x and y dimensions of the cell embedding.
lab_type
One of "ClusterNames", "ClusterNamesAll", or "Clusters".
"ClusterNames" places cluster names (added to sCVdata object by
labelCellTypes) at the centroid of all points sharing that
cluster name (can span clusters). "ClusterNamesAll" places cluster names at
the centroid of each cluster. "Clusters" places cluster ID
(levels(Clusters(sCVd))) at the centroid of each cluster.
BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.
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| tsne_labels | R Documentation |
scClustViz plot element: Cluster names on cluster centroid.
Description
See plot_tsne for application.
Usage
tsne_labels(sCVd, cell_coord, lab_type)
Arguments
sCVd |
An sCVdata object. |
cell_coord |
A numeric matrix where named rows are cells, and two columns are the x and y dimensions of the cell embedding. |
lab_type |
One of "ClusterNames", "ClusterNamesAll", or "Clusters".
"ClusterNames" places cluster names (added to sCVdata object by
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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