Files in BaderLab/scClustViz
Differential Expression-based scRNAseq Cluster Assessment and Viewing
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/dataAccess.R
R/deTest.R
R/helperFx.R
R/runViz.R
R/sCVdataClass.R
R/scClustViz.R
R/shinyModules.R
R/spreadLabels2.R
README.md
_config.yml
inst/blank.html
inst/paperFigs/Fig1.R
inst/paperFigs/v1_Fig1.R
man/CalcAllSCV.Rd
man/CalcCGS.Rd
man/CalcDEcombn.Rd
man/CalcDEvsRest.Rd
man/CalcSCV.Rd
man/CalcSilhouette.Rd
man/ColNNZ.Rd
man/DEdist.Rd
man/DEdistNN.Rd
man/DEmarker.Rd
man/DEneighb.Rd
man/RowNNZ.Rd
man/addCellMarkersToCGS.Rd
man/cosineSim.Rd
man/dotplotDEgenes.Rd
man/findKeyType.Rd
man/fx_calcCGS.Rd
man/fx_calcCGS_BP.Rd
man/fx_calcDEcombn.Rd
man/fx_calcDEcombn_BP.Rd
man/fx_calcDEcombn_slow.Rd
man/fx_calcDEvsRest.Rd
man/fx_calcDEvsRest_BP.Rd
man/fx_calcDEvsRest_slow.Rd
man/fx_calcDist_cellEmb.Rd
man/fx_calcDist_geneExpr.Rd
man/fx_calcDist_numDE.Rd
man/fx_calcDist_scoreDE.Rd
man/fx_calcEScombn.Rd
man/fx_calcESvsRest.Rd
man/fx_calcESvsRest_BP.Rd
man/fx_calcMarker.Rd
man/fx_calcNeighb.Rd
man/fx_calcSilhouette.Rd
man/getEmb.Rd
man/getExpr.Rd
man/getMD.Rd
man/hasEmb.Rd
man/labelCellTypes.Rd
man/map2symbol.Rd
man/meanLogX.Rd
man/origin.label.dist.Rd
man/overlap.edge.Rd
man/overlap.proportion.point.Rd
man/plot_GEboxplot.Rd
man/plot_clustSep.Rd
man/plot_clusterGenes_DEgenes.Rd
man/plot_clusterGenes_markers.Rd
man/plot_clusterGenes_search.Rd
man/plot_compareClusts.Rd
man/plot_deDotplot.Rd
man/plot_mdCompare.Rd
man/plot_mdPerClust.Rd
man/plot_sil.Rd
man/plot_tsne.Rd
man/runShiny.Rd
man/sCVdata-class.Rd
man/sCVparams-class.Rd
man/scClustViz.Rd
man/spreadLabels2.Rd
man/subsetCells.Rd
man/tsne_labels.Rd
scClustViz.Rproj
tests/testthat.R
tests/testthat/test_CalcCGS.R
tests/testthat/test_CalcDEcombn.R
tests/testthat/test_CalcDEvsRest.R
tests/testthat/test_DEdist.R
