DEneighb: Find differentially expressed genes between nearest...

DEneighbR Documentation

Find differentially expressed genes between nearest neighbouring clusters

Description

Identifies the significantly differentially expressed genes between nearest neighbouring clusters, using the pairwise differential gene expression testing results.

Usage

DEneighb(sCVd, FDRthresh)

## S4 method for signature 'sCVdata'
DEneighb(sCVd, FDRthresh)

Arguments

sCVd

An sCVdata object.

FDRthresh

False discovery rate for counting significance.

Value

A named list of data frames, one entry for each cluster. Each data frame is the results of the gene expression test comparing the cluster to its nearest neighbour. See CalcDEcombn and DEcombn for details.

Methods (by class)

  • sCVdata: Find DE genes between nearest neighbours from sCVdata


BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.