fx_calcDist_cellEmb: Internal function for distance between clusters from cell...
In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing
fx_calcDist_cellEmb R Documentation
Internal function for distance between clusters from cell embedding
Description
Internal function. See DEdist.
Usage
fx_calcDist_cellEmb(cl, cellEmb)
Arguments
cellEmb
A cell embedding with cells in rows and dimensions in columns.
deVS
List of pairwise DE results from CalcDEcombn
Details
Calculates euclidean distance between centroids of each cluster in the cell
embedding used for clustering. Calculated using dist.
Value
A matrix of distances between clusters for each cluster resolution.
Interpretable by as.dist to generate a dist
object.
BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.
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| fx_calcDist_cellEmb | R Documentation |
Internal function for distance between clusters from cell embedding
Description
Internal function. See DEdist.
Usage
fx_calcDist_cellEmb(cl, cellEmb)
Arguments
cellEmb |
A cell embedding with cells in rows and dimensions in columns. |
deVS |
List of pairwise DE results from |
Details
Calculates euclidean distance between centroids of each cluster in the cell
embedding used for clustering. Calculated using dist.
Value
A matrix of distances between clusters for each cluster resolution.
Interpretable by as.dist to generate a dist
object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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