fx_calcMarker: Internal function to find marker genes for each cluster
In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing
fx_calcMarker R Documentation
Internal function to find marker genes for each cluster
Description
Internal function. See DEmarker.
Usage
fx_calcMarker(deVS, FDRthresh)
Arguments
deVS
List of pairwise DE results from CalcDEcombn.
FDRthresh
False discovery rate for counting significance.
Details
Identifies the significantly positively differentially expressed genes
between a cluster and all other clusters, using the pairwise differential
gene expression testing results.
Value
A named list of data frames, one entry for each cluster. Each data
frame is the combined results of the set of pairwise gene expression tests
comparing the cluster to each other cluster in the data. See
CalcDEcombn and DEcombn for details.
BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.
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| fx_calcMarker | R Documentation |
Internal function to find marker genes for each cluster
Description
Internal function. See DEmarker.
Usage
fx_calcMarker(deVS, FDRthresh)
Arguments
deVS |
List of pairwise DE results from |
FDRthresh |
False discovery rate for counting significance. |
Details
Identifies the significantly positively differentially expressed genes between a cluster and all other clusters, using the pairwise differential gene expression testing results.
Value
A named list of data frames, one entry for each cluster. Each data
frame is the combined results of the set of pairwise gene expression tests
comparing the cluster to each other cluster in the data. See
CalcDEcombn and DEcombn for details.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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