fx_calcDist_scoreDE: Internal function for distance between clusters by DE score.
In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing
fx_calcDist_scoreDE R Documentation
Internal function for distance between clusters by DE score.
Description
Internal function. See DEdist.
Usage
fx_calcDist_scoreDE(deVS)
Arguments
deVS
List of pairwise DE results from CalcDEcombn
Details
Sums absolute DE scores between each pair of clusters from
CalcDEcombn output. DE scores are -log10(FDR). Used to
determine nearest neighbouring clusters.
Value
A matrix of distances between clusters for each cluster resolution.
Interpretable by as.dist to generate a dist
object.
BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.
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| fx_calcDist_scoreDE | R Documentation |
Internal function for distance between clusters by DE score.
Description
Internal function. See DEdist.
Usage
fx_calcDist_scoreDE(deVS)
Arguments
deVS |
List of pairwise DE results from |
Details
Sums absolute DE scores between each pair of clusters from
CalcDEcombn output. DE scores are -log10(FDR). Used to
determine nearest neighbouring clusters.
Value
A matrix of distances between clusters for each cluster resolution.
Interpretable by as.dist to generate a dist
object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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