DEmarker: Find marker genes for each cluster

In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing

Find marker genes for each cluster

Description

Identifies the significantly positively differentially expressed genes between a cluster and all other clusters, using the pairwise differential gene expression testing results.

Usage

DEmarker(sCVd, FDRthresh)

## S4 method for signature 'sCVdata'
DEmarker(sCVd, FDRthresh)

Arguments

sCVd	An sCVdata object.
FDRthresh	False discovery rate for counting significance.

Value

A named list of data frames, one entry for each cluster. Each data frame is the combined results of the set of pairwise gene expression tests comparing the cluster to each other cluster in the data. See CalcDEcombn and DEcombn for details.

Methods (by class)

• sCVdata: Find marker genes from sCVdata

BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.