fx_calcDist_geneExpr: Internal function for distance between clusters by gene...
In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing
fx_calcDist_geneExpr R Documentation
Internal function for distance between clusters by gene expression statistic.
Description
Internal function. See DEdist.
Usage
fx_calcDist_geneExpr(CGS, metric)
Arguments
metric
A summary statistic of gene expression per cluster, from
CalcCGS
deVS
List of pairwise DE results from CalcDEcombn
Details
Calculates euclidean distance in gene expression space between each pair of
clusters, using a summary statistic of gene expression for each cluster.
Calculated using dist.
Value
A matrix of distances between clusters for each cluster resolution.
Interpretable by as.dist to generate a dist
object.
BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.
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| fx_calcDist_geneExpr | R Documentation |
Internal function for distance between clusters by gene expression statistic.
Description
Internal function. See DEdist.
Usage
fx_calcDist_geneExpr(CGS, metric)
Arguments
metric |
A summary statistic of gene expression per cluster, from
|
deVS |
List of pairwise DE results from |
Details
Calculates euclidean distance in gene expression space between each pair of
clusters, using a summary statistic of gene expression for each cluster.
Calculated using dist.
Value
A matrix of distances between clusters for each cluster resolution.
Interpretable by as.dist to generate a dist
object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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