plot_deDotplot: scClustViz plot: Plot gene expression dotplots.

In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing

scClustViz plot: Plot gene expression dotplots.

Description

This function makes dotplots (a heatmap analogue) showing gene expression for a set of genes across all clusters.

Usage

plot_deDotplot(sCVd, DEgenes, DEnum)

Arguments

sCVd	The sCVdata object.
DEgenes	The output of dotplotDEgenes.
DEnum	Single integer representing the maximum number of DE genes per cluster to include in the dotplot.

Details

When generated in an interactive context (i.e. RStudio), this can sometimes result in a figure margins too large error. See example for suggested dimensions of the graphic device.

Examples

## Not run: 
pdf("filepath.pdf",width=11,height=7)
plot_deDotplot(sCVd=sCVdata,
               DEgenes=dotplotDEgenes(sCVdata,
                                      DEtype="DEneighb",
                                      FDRthresh=0.01)
               DEnum=5)
dev.off()

## End(Not run)

BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.