fx_calcNeighb: Internal function to find DE genes between nearest...
In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing
fx_calcNeighb R Documentation
Internal function to find DE genes between nearest neighbouring clusters
Description
Internal function. See DEneighb.
Usage
fx_calcNeighb(deVS, NN, FDRthresh)
Arguments
deVS
List of pairwise DE results from CalcDEcombn.
NN
A vector of nearest neighbours from DEdistNN.
FDRthresh
False discovery rate for counting significance.
Details
Identifies the significantly differentially expressed genes between nearest
neighbouring clusters, using the pairwise differential gene expression
testing results.
Value
A named list of data frames, one entry for each cluster. Each data
frame is the results of the gene expression test comparing the cluster to
its nearest neighbour. See CalcDEcombn and
DEcombn for details.
BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.
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| fx_calcNeighb | R Documentation |
Internal function to find DE genes between nearest neighbouring clusters
Description
Internal function. See DEneighb.
Usage
fx_calcNeighb(deVS, NN, FDRthresh)
Arguments
deVS |
List of pairwise DE results from |
NN |
A vector of nearest neighbours from |
FDRthresh |
False discovery rate for counting significance. |
Details
Identifies the significantly differentially expressed genes between nearest neighbouring clusters, using the pairwise differential gene expression testing results.
Value
A named list of data frames, one entry for each cluster. Each data
frame is the results of the gene expression test comparing the cluster to
its nearest neighbour. See CalcDEcombn and
DEcombn for details.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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