hasEmb: List cell embedding types from input data object
In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing
hasEmb R Documentation
List cell embedding types from input data object
Description
Show all available cell embedding coordinates from the dimensionality reduction
results stored in the single-cell data object containing the input data for
scClustViz visualization.
Usage
hasEmb(x)
Arguments
x
The single-cell data object.
Details
This is a wrapper function to the relevant class's cell metadata slot
accessor / assignment method. Currently supported input object classes:
Class seurat/Seurat accessed by
x@DRtype.rot or x@dr$DRtype@cell.embeddings or
x@reductions$DRtype@cell.embeddings,
depending on Seurat object version.
Class SingleCellExperiment
accessed by reducedDim(x,DRtype).
BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.
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| hasEmb | R Documentation |
List cell embedding types from input data object
Description
Show all available cell embedding coordinates from the dimensionality reduction results stored in the single-cell data object containing the input data for scClustViz visualization.
Usage
hasEmb(x)
Arguments
x |
The single-cell data object. |
Details
This is a wrapper function to the relevant class's cell metadata slot accessor / assignment method. Currently supported input object classes:
Class
seurat/Seurataccessed byx@DRtype.rotorx@dr$DRtype@cell.embeddingsorx@reductions$DRtype@cell.embeddings, depending on Seurat object version.Class
SingleCellExperimentaccessed byreducedDim(x,DRtype).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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