dotplotDEgenes: scClustViz plot helper function: Return DE genes per cluster

In BaderLab/scClustViz: Differential Expression-based scRNAseq Cluster Assessment and Viewing

scClustViz plot helper function: Return DE genes per cluster

Description

This function returns a named numeric vector of FDR-corrected p-values for statistically significant differentially expressed genes for a set comparison type and FDR threshold. For "DEmarker", the returned value is the max of all comparisons.

Usage

dotplotDEgenes(sCVd, DEtype, FDRthresh)

Arguments

sCVd	The sCVdata object.
DEtype	One of: "DEvsRest" - see DEvsRest; "DEneighb" - see DEneighb; "DEmarker" - see DEmarker.
FDRthresh	A numeric vector of length 1 setting a false discovery rate threshold for statistical significance.

Examples

## Not run: 
dotplotDEgenes(sCVdata,
               DEtype="DEneighb",
               FDRthresh=0.01)

## End(Not run)

BaderLab/scClustViz documentation built on Sept. 10, 2023, 11:51 p.m.