filterCodonDB: filter codon position and type

In CMWbio/geaR: GDS Evolutionary Analysis in R

filter codon position and type

Description

Use a codon database to filter codons based on position and degeneracy

Usage

filterCodonDB(DB, position, degeneracy)

Arguments

DB	GRangeList or character vector containing the path to a SQL database
position	character any combination of c("first", "second", "third").
degeneracy	character this will select positions based on degeneracy can be one of c(0, 2). This will overwrite the position argument. For four fold degenerate sites use valicate4fold().

Value

An object of class GRanges containing codon ranges for positions specified.

CMWbio/geaR documentation built on April 22, 2023, 6:23 a.m.