Files in CMWbio/geaR
GDS Evolutionary Analysis in R

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/Gmin.R R/RcppExports.R R/RelDist.R R/admixtureFunctions.R R/analyzeCog.R R/analyzeGear.R R/cog-class.R R/dmax.R R/dmin.R R/dxyAF.R R/extractionFunctions.R R/federRND.R R/filterCodonDB.R R/gear-class.R R/genoDist.R
R/genoDistFAST.R
R/getAF.R R/getCodonIndex.R R/getCodonsFromFasta.R R/getFeatures.R R/getGenotypes.R R/getPositionFromDB.R R/getsummaryStats.R R/makeCog.R R/mergeLoci.R R/neisDxy.R R/neisPi.R R/neisda.R R/snpWindowMaker.R R/summarizeStats.R R/validate4FoldCodons.R R/weightedFst.R R/windowMaker.R README.md
TODO
_config.yml
geaR.Rproj
inst/extdata/sampleGFF.gff3
inst/extdata/sampleReferenceGenome.fa
inst/extdata/sampleReferenceGenome.fa.fai
inst/extdata/sampleVCF.gds
inst/extdata/sampleVCF.vcf.gz
man/Gmin.Rd man/Nei82Fst.Rd man/RND.Rd man/analyzeCog-methods.Rd man/analyzeGear-methods.Rd man/buildCodonDB-methods.Rd man/cog-class.Rd man/dmax.Rd man/dmin.Rd man/dxyAF.Rd man/filterCodonDB.Rd man/gear-class.Rd man/genoDist.Rd man/getAF.Rd man/getAdmixFromGear.Rd man/getCodonsFromFasta.Rd man/getDivFromGear.Rd man/getGenotypes.Rd man/getPositionFromDB-methods.Rd man/makeCogs-methods.Rd man/makeFeatures-methods.Rd man/makeGear.Rd man/mergeLoci.Rd man/neisDa.Rd man/neisDxy.Rd man/neisPi.Rd man/relDxy.Rd man/snpWindowMaker-methods.Rd man/summarizeStats.Rd man/validate4FoldCodons.Rd man/windowMaker-methods.Rd setup.R
src/RcppExports.cpp
src/RcppExports.o
src/geaR.so
src/matrixMap.cpp
src/matrixMap.o
vignette/vignette.Rmd
CMWbio/geaR documentation built on April 22, 2023, 6:23 a.m.