validate4FoldCodons: Validate 4fold degenerate codons
In CMWbio/geaR: GDS Evolutionary Analysis in R
validate4FoldCodons R Documentation
Validate 4fold degenerate codons
Description
This function will validate 4 fold degenerate codons using a provided SNP dataset
You only need to run this if you are interested in 4 fold degenerate sights
Usually used for their quasi neutrality
Usage
validate4FoldCodons(GDS, input, nCores, pops)
Arguments
GDS
an open GDS file with genptypes
input
character or GRangesList. Path to sql database or GRange list containing codon index
nCores
numeric number of cores
pops
data.frame population data frame
Value
An object of class GRanges containing codon ranges for positions specified.
CMWbio/geaR documentation built on April 22, 2023, 6:23 a.m.
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| validate4FoldCodons | R Documentation |
Validate 4fold degenerate codons
Description
This function will validate 4 fold degenerate codons using a provided SNP dataset You only need to run this if you are interested in 4 fold degenerate sights Usually used for their quasi neutrality
Usage
validate4FoldCodons(GDS, input, nCores, pops)
Arguments
GDS |
an open GDS file with genptypes |
input |
|
nCores |
|
pops |
|
Value
An object of class GRanges containing codon ranges for positions specified.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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