getCodonsFromFasta: get codon positions from fasta
In CMWbio/geaR: GDS Evolutionary Analysis in R
View source: R/getCodonsFromFasta.R
getCodonsFromFasta R Documentation
get codon positions from fasta
Description
Imports genotypes across a locus into matrix
Usage
getCodonsFromFasta(genome = genome, exons)
Arguments
GDS
GDS object with variant data to import genotypes from
locus
GRanges Locus to import genotypes for
minSites
numeric minimum number of sites as a proportion of loci length
nucleotide
logical Import RAW genotypes or nucleotides
Details
Authours: Chris Ward & Alastair Ludington
Uses a GRanges locus to import genotypes, either nucleotide or RAW, from a GDS file
Value
A matrix of genotypes
CMWbio/geaR documentation built on April 22, 2023, 6:23 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/getCodonsFromFasta.R
| getCodonsFromFasta | R Documentation |
get codon positions from fasta
Description
Imports genotypes across a locus into matrix
Usage
getCodonsFromFasta(genome = genome, exons)
Arguments
GDS |
|
locus |
|
minSites |
|
nucleotide |
|
Details
Authours: Chris Ward & Alastair Ludington Uses a GRanges locus to import genotypes, either nucleotide or RAW, from a GDS file
Value
A matrix of genotypes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.