getCodonsFromFasta: get codon positions from fasta

Description Usage Arguments Details Value

Description

Imports genotypes across a locus into matrix

Usage

1
getCodonsFromFasta(genome = genome, exons)

Arguments

GDS

GDS object with variant data to import genotypes from

locus

GRanges Locus to import genotypes for

minSites

numeric minimum number of sites as a proportion of loci length

nucleotide

logical Import RAW genotypes or nucleotides

Details

Authours: Chris Ward & Alastair Ludington Uses a GRanges locus to import genotypes, either nucleotide or RAW, from a GDS file

Value

A matrix of genotypes


CMWbio/geaR documentation built on June 21, 2019, 10:48 a.m.