snpWindowMaker-methods: Sliding or Tiled snpwindow maker.

In CMWbio/geaR: GDS Evolutionary Analysis in R

Sliding or Tiled snpwindow maker.

Description

Makes sliding and tiled windows from data frame

Usage

snpWindowMaker(
  x,
  windowSize,
  stepSize,
  nCores = 1,
  GDS = NULL,
  snpWindow = FALSE,
  loci = NULL,
  ...
)

## S4 method for signature 'data.frame'
snpWindowMaker(
  x,
  windowSize,
  stepSize,
  nCores,
  GDS = NULL,
  snpWindow = FALSE,
  loci = NULL
)

Arguments

x	Can be a data.frame object containing ID and Length columns for each scaffold, Granges or GRangesList object
stepSize	numeric Window step size in base pairs. Default is 0, specifies a tiled window.
WindowSize	numeric Window size in base pairs

Details

Authours: Chris Ward & Alastair Ludington
Generates tiled (no step size) and sliding (step size) ranges for analysis with other functions.

Value

A GRangesList object where each element is a genomic window.

CMWbio/geaR documentation built on April 22, 2023, 6:23 a.m.