getAF: Calculates population based allele frequency
In CMWbio/geaR: GDS Evolutionary Analysis in R
getAF R Documentation
Calculates population based allele frequency
Description
Calculates population based allele frequency
Usage
getAF(GDS, locus, minSites, pops, refAllele, counts = FALSE)
Arguments
GDS
allele frequency
locus
Granges locus to act on
minSites
minimum sites within a window to act on
pop
populations dataframe
Details
Authours: Chris Ward
Calculates population based allele frequency
Value
A tibble of population allele frequency for biallelic SNPs
CMWbio/geaR documentation built on April 22, 2023, 6:23 a.m.
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| getAF | R Documentation |
Calculates population based allele frequency
Description
Calculates population based allele frequency
Usage
getAF(GDS, locus, minSites, pops, refAllele, counts = FALSE)
Arguments
GDS |
allele frequency |
locus |
Granges locus to act on |
minSites |
minimum sites within a window to act on |
pop |
populations dataframe |
Details
Authours: Chris Ward Calculates population based allele frequency
Value
A tibble of population allele frequency for biallelic SNPs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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