summarizeStats: Calculates block jackknifed mean for statistics

In CMWbio/geaR: GDS Evolutionary Analysis in R

Calculates block jackknifed mean for statistics

Description

summarize statistics using a block jacknife

summarize statistics using a block jacknife

Usage

summarizeStats(
  x,
  blockSize = 1000000L,
  which = NULL,
  nCores = 1,
  stat = "diversity"
)

summarizeStats(
  x,
  blockSize = 1000000L,
  which = NULL,
  nCores = 1,
  stat = "diversity"
)

Arguments

x	A gear Analyzed gear object
blockSize	integer default 1000000L. The block size in basepairs.
which	character,NULL default NULL. Only calculates across specified scaffolds/chromosomes. if NULL will calculate across all windows provided.
nCores	numeric Number of cores allcated for calculations.
stats	character,NULL default NULL. Only calculates for specified statistics contained in the dataframe. if NULL will calculate across all statistics provided.

Details

Authours: Chris Ward

Authours: Chris Ward

Value

A dataframe with mean, jackSE, Zscore, median, and maximum for each statistic.

A dataframe with mean, jackSE, Zscore, median, and maximum for each statistic.

CMWbio/geaR documentation built on April 22, 2023, 6:23 a.m.