bin_granges: Bins each region in a 'GRanges' object into bins of specified...
In CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data
Description
Usage
Arguments
Details
Value
Examples
Description
Bins each region in a GRanges object into bins of specified bin_size
Usage
1
bin_granges(gr, bin_size = 1e+05)
Arguments
gr
GRanges; The GRanges object
bin_size
integer; x > 0; The length of region in each bin
Details
Bins a single region in GRanges format into multiple regions with a specified bin_size. If length(gr) %% bin_size != 0, then the last GRange will have a length < bin_size. This is used instead of tile when you need consistently sized bins with the last bin being smaller
Value
GRangesList containing all the binned GRanges
Examples
1
2
regions <- GenomicRanges::GRanges(seqnames = "chr1", ranges = IRanges(1,10000))
bin_granges(regions,bin_size=1000)
CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.
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Description Usage Arguments Details Value Examples
Description
Bins each region in a GRanges object into bins of specified bin_size
Usage
1 | bin_granges(gr, bin_size = 1e+05)
|
Arguments
gr |
GRanges; The |
bin_size |
integer; x > 0; The length of region in each bin |
Details
Bins a single region in GRanges format into multiple regions with a specified bin_size. If length(gr) %% bin_size != 0, then the last GRange will have a length < bin_size. This is used instead of tile when you need consistently sized bins with the last bin being smaller
Value
GRangesList containing all the binned GRanges
Examples
1 2 | regions <- GenomicRanges::GRanges(seqnames = "chr1", ranges = IRanges(1,10000))
bin_granges(regions,bin_size=1000)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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