load_HDF5_scMethrix: Loads HDF5 'scMethrix' object
In CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data
Description
Usage
Arguments
Details
Value
Examples
View source: R/scmethrix_operations.R
Description
Loads HDF5 scMethrix object
Usage
1
load_HDF5_scMethrix(dir = NULL, verbose = TRUE, ...)
Arguments
dir
The directory to read in from. Default NULL
verbose
boolean; Flag for outputting function status messages. Default = TRUE
...
Parameters to pass to loadHDF5SummarizedExperiment
Details
Takes directory with a previously saved HDF5Array format scMethrix object and loads it
Value
An object of class scMethrix
Examples
1
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3
4
5
data('scMethrix_data')
dir <- paste0(tempdir(),"/h5")
scm <- convert_scMethrix(scMethrix_data, h5_dir=dir)
save_HDF5_scMethrix(scm, h5_dir = dir, replace = TRUE)
n <- load_HDF5_scMethrix(dir)
CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.
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Description Usage Arguments Details Value Examples
View source: R/scmethrix_operations.R
Description
Loads HDF5 scMethrix object
Usage
1 | load_HDF5_scMethrix(dir = NULL, verbose = TRUE, ...)
|
Arguments
dir |
The directory to read in from. Default NULL |
verbose |
boolean; Flag for outputting function status messages. Default = TRUE |
... |
Parameters to pass to |
Details
Takes directory with a previously saved HDF5Array format scMethrix object and loads it
Value
An object of class scMethrix
Examples
1 2 3 4 5 | data('scMethrix_data')
dir <- paste0(tempdir(),"/h5")
scm <- convert_scMethrix(scMethrix_data, h5_dir=dir)
save_HDF5_scMethrix(scm, h5_dir = dir, replace = TRUE)
n <- load_HDF5_scMethrix(dir)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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