convert_scMethrix: Converts an in-memory 'scMethrix' to an HDF5 'scMethrix'

In CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data

Description

Converts an in-memory scMethrix to an HDF5 scMethrix

Usage

convert_scMethrix(scm = NULL, h5_dir = NULL, verbose = TRUE)

Arguments

scm	scMethrix; the single cell methylation experiment
h5_dir	string; The directory to use. Will be created if it does not exist. Default = NULL
verbose	boolean; Flag for outputting function status messages. Default = TRUE

Details

Takes a scMethrix object and returns with the same object with delayed array assay slots with HDF5 backend. Might take long time!

Value

An object of class scMethrix, HDF5 format

Examples

data('scMethrix_data')
convert_scMethrix(scMethrix_data, h5_dir=paste0(tempdir(),"/h5"))

CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.