CompEpigen/scMethrix
Fast and efficient summarization of single cell whole genome bisulfate data

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CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data
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API

API for CompEpigen/scMethrix
Fast and efficient summarization of single cell whole genome bisulfate data

Global functions
.onLoad Source code
.validateArg Man page Source code
.validateAssay Man page Source code
.validateExp Man page Source code
.validateThreads Man page Source code
.validateType Source code
.validateValue Man page Source code
FUN Source code
append_colData Man page Source code
benchmark_imputation Man page Source code
bin_granges Man page Source code
bin_scMethrix Man page Source code
binarize Man page Source code
cast_datatable Man page Source code
cast_granges Man page Source code
cluster_scMethrix Man page Source code
colbind Man page Source code
collapse_samples Man page Source code
convert_HDF5_scMethrix Man page Source code
convert_scMethrix Man page Source code
create_scMethrix Source code
dim_red_scMethrix Man page Source code
export_beds Man page Source code
export_bigwigs Man page Source code
export_bsseq Man page Source code
export_methrix Man page Source code
export_seurat Source code
extract_CpGs Man page Source code
fill Man page Source code
generate_random_subset Man page
generate_training_set Man page
generic_scMethrix_function Man page Source code
get_distance_matrix Man page Source code
get_matrix Man page Source code
get_metadata_stats Man page Source code
get_palette Man page Source code
get_region_summary Man page
get_sample_name Man page Source code
get_shape Man page Source code
get_source_idx Man page Source code
get_stats Man page Source code
has_cov Man page Source code
impute_by_melissa Man page
impute_regions Man page
is_h5 Man page Source code
liftover_CpGs Man page Source code
load_HDF5_scMethrix Man page Source code
mask_by_coverage Man page Source code
mask_by_sample Man page Source code
mask_by_variance Man page Source code
mask_helper Man page
merge_scMethrix Man page Source code
parse_source_idx Man page Source code
plot_coverage Man page Source code
plot_density Man page Source code
plot_dim_red Man page Source code
plot_imap Source code
plot_melissa Source code
plot_sparsity Man page Source code
plot_stats Man page Source code
plot_violin Man page Source code
prepare_plot_data Man page Source code
read_bed_by_index Man page Source code
read_beds Man page Source code
read_hdf5_data Man page
read_index Man page Source code
read_mem_data Man page
reduce_cpgs Man page Source code
remove_assay Man page Source code
remove_uncovered Man page Source code
save_HDF5_scMethrix Man page Source code
scMethrix Man page
scMethrix-class Man page
scMethrix_data Man page
scMethrix_theme Man page
split_time Man page Source code
split_vector Man page Source code
start_time Man page Source code
stop_time Man page Source code
subset_ref_cpgs Man page Source code
subset_scMethrix Man page Source code
transform_assay Man page Source code
CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.

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