mask_helper: Helper function for masking. All rows in row_idx will be set...
In CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data
Description
Usage
Arguments
Details
Value
Description
Helper function for masking. All rows in row_idx will be set to NA.
Usage
1
mask_helper(scm, row_idx, verbose = TRUE)
Arguments
scm
scMethrix; the single cell methylation experiment
row_idx
numeric; A vector of row indexes for which to replace with NA
verbose
boolean; Flag for outputting function status messages. Default = TRUE
Details
Used with mask_by_sample, mask_by_coverage, and mask_by_variance. It iterates through all assays in the inputted scMethrix object and replaces all rows in row_idx with NA.
Value
An object of class scMethrix
CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.
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Description Usage Arguments Details Value
Description
Helper function for masking. All rows in row_idx will be set to NA.
Usage
1 | mask_helper(scm, row_idx, verbose = TRUE)
|
Arguments
scm |
|
row_idx |
numeric; A vector of row indexes for which to replace with NA |
verbose |
boolean; Flag for outputting function status messages. Default = TRUE |
Details
Used with mask_by_sample, mask_by_coverage, and mask_by_variance. It iterates through all assays in the inputted scMethrix object and replaces all rows in row_idx with NA.
Value
An object of class scMethrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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