export_methrix: Converts an 'scMethrix' object to methrix object
In CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data
Description
Usage
Arguments
Details
Value
Examples
View source: R/scMethrix_export.R
Description
Converts an scMethrix object to methrix object
Usage
1
export_methrix(scm = NULL, h5_dir = NULL)
Arguments
scm
scMethrix; the single cell methylation experiment
h5_dir
Location to save the methrix H5 file
Details
Removes extra slot data from an scMethrix object and changes structure to match
methrix format. A 'counts' assay for coverage values must be present.
Functionality not supported by methrix (e.g. reduced dimensionality)
will be discarded.
Value
a methrix object
Examples
1
2
data('scMethrix_data')
# convert_to_methrix(scMethrix_data)
CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.
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Description Usage Arguments Details Value Examples
View source: R/scMethrix_export.R
Description
Converts an scMethrix object to methrix object
Usage
1 | export_methrix(scm = NULL, h5_dir = NULL)
|
Arguments
scm |
|
h5_dir |
Location to save the methrix H5 file |
Details
Removes extra slot data from an scMethrix object and changes structure to match
methrix format. A 'counts' assay for coverage values must be present.
Functionality not supported by methrix (e.g. reduced dimensionality)
will be discarded.
Value
a methrix object
Examples
1 2 | data('scMethrix_data')
# convert_to_methrix(scMethrix_data)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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