get_metadata_stats: Adds descriptive statistics to metadata columns in an...
In CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data
Description
Usage
Arguments
Details
Value
Examples
View source: R/scmethrix_operations.R
Description
Adds descriptive statistics to metadata columns in an scMethrix object.
Usage
1
get_metadata_stats(scm)
Arguments
scm
scMethrix; the single cell methylation experiment
Details
Adds the mean, median, SD, and sample count and coverage (if present) for the GenomicRanges in an scMethrix object. This can be accessed using mcols().
This data will not be updated automatically for any subset, merge, bin, etc functions.
Value
An scMethrix object
Examples
1
2
data('scMethrix_data')
get_metadata_stats(scMethrix_data)
CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.
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Description Usage Arguments Details Value Examples
View source: R/scmethrix_operations.R
Description
Adds descriptive statistics to metadata columns in an scMethrix object.
Usage
1 | get_metadata_stats(scm)
|
Arguments
scm |
|
Details
Adds the mean, median, SD, and sample count and coverage (if present) for the GenomicRanges in an scMethrix object. This can be accessed using mcols().
This data will not be updated automatically for any subset, merge, bin, etc functions.
Value
An scMethrix object
Examples
1 2 | data('scMethrix_data')
get_metadata_stats(scMethrix_data)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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