plot_sparsity: Sparsity of sample inheritParams generic_plot_function

In CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data

Description

Sparsity of sample inheritParams generic_plot_function

Usage

plot_sparsity(
  scm = NULL,
  assay = "score",
  type = c("box", "scatter"),
  pheno = NULL,
  verbose = TRUE
)

Arguments

scm	scMethrix; the single cell methylation experiment
assay	string; name of an existing assay. Default = "score"
type	string; Choose between 'box' (boxplot) or 'scatter' (scatterplot).
pheno	string; Col name of colData(m). Will be used as a factor to color different groups
verbose	boolean; Flag for outputting function status messages. Default = TRUE

Value

ggplot2 object

Examples

data('scMethrix_data')
plot_sparsity(scm = scMethrix_data)

CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.