remove_assay: Removes an assay from an 'scMethrix' object
In CompEpigen/scMethrix: Fast and efficient summarization of single cell whole genome bisulfate data
Description
Usage
Arguments
Details
Value
Examples
View source: R/scmethrix_operations.R
Description
Removes an assay from an scMethrix object
Usage
1
remove_assay(scm = NULL, assay = NULL)
Arguments
scm
scMethrix; the single cell methylation experiment
assay
string; name of an existing assay. Default = "score"
Details
This will remove an assay from the scMethrix experiment object. All transformed assays may be removed, as well as the coverage assay (since it is less useful when compared to normal WGBS data), but the score assay cannot be removed. Reduced dimensionality data will be retained even if the parent assay is removed.
Value
An scMethrix object
Examples
1
2
data('scMethrix_data')
remove_assay(scMethrix_data,assay="counts")
CompEpigen/scMethrix documentation built on Nov. 6, 2021, 3:09 p.m.
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Description Usage Arguments Details Value Examples
View source: R/scmethrix_operations.R
Description
Removes an assay from an scMethrix object
Usage
1 | remove_assay(scm = NULL, assay = NULL)
|
Arguments
scm |
|
assay |
string; name of an existing assay. Default = "score" |
Details
This will remove an assay from the scMethrix experiment object. All transformed assays may be removed, as well as the coverage assay (since it is less useful when compared to normal WGBS data), but the score assay cannot be removed. Reduced dimensionality data will be retained even if the parent assay is removed.
Value
An scMethrix object
Examples
1 2 | data('scMethrix_data')
remove_assay(scMethrix_data,assay="counts")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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